Did 8000 mile service, new plugs, synced throttle bodies, got ECU flashed by Vcyclenut. Drove it to work and it's like a totally different bike, in a good way.
A little late to this post but i just wanted to mention that I bought my FJ used with the eBay pegs already mounted. I have put 5000 miles on the bike and the rubber is tearing on the left peg. i am already missing a large piece of the lateral raised strip of rubber. I'm OK with this seeing as the pegs are inexpensive but I thought I'd let everyone know. This might be because I mount and dismount the bike from the peg, not the ground. Not as flexible as I used to be.
Done a bunch of stuff to the bike but most of it is already posted by others. I did see some home made mud flaps on here so I made one. Actually tested it today after two days of rain. I live on a dirt road so lots of sand, mud, and puddles. Worked great. Kept the shock clean.